AI summary · arXiv: 2110.14116v1 · q-bio.QM

Data-driven decomposition of brain dynamics with principal component analysis in different types of head impacts

Xianghao Zhan, Yuzhe Liu, Nicholas J. Cecchi, Olivier Gevaert, Michael M. Zeineh, Gerald A. Grant, David B. Camarillo

Original paper · DOI Submitted to arXiv on 27 Oct. 2021 License: CC BY 4.0

The essentials

  • The study develops a data-driven brain dynamics decomposition approach based on principal component analysis (PCA) to analyze the spatial distribution of brain deformation and extract representative patterns of injury metrics in different types of head impacts.
  • The aim is to address the limitations of kinematics-based models that suffer from significant differences in both kinematics and injury metrics across head impact types.
  • PCA is applied to decompose the patterns of injury metrics, including maximum principal strain (MPS), MPS rate (MPSR), and MPSXMPSR, for all impacts in each impact type and investigate their distributions among brain regions using the first principal component (PC1).
  • A deep learning head model (DLHM) is developed to predict PC1 and then inverse-transform to predict for all brain elements.
  • The DLHM reached mean absolute errors of <0.018 for MPS, <3.7 (1/s) for MPSR, and <1.1 (1/s) for MPSXMPSR, which are much smaller than the injury thresholds.
  • The brain injury metric in a dataset can be decomposed into mean components and PC1 with high explained variance, enabling better interpretation of the patterns in brain injury metrics and sensitivity across impact types while reducing the dimensionality of DLHM.
  • Limitations include: KTH FE model has limitations compared to more advanced FE models; other components' influences should not be ignored; mean components may lead to a decrease in prediction accuracy if test impacts are sampled from a significantly different data distribution.
  • Future studies can adopt more advanced FE models, incorporate more higher-order principal components, and weigh PC1 more during DLHM training to enable even more accurate DLHMs based on brain dynamics decomposition approach.
  • Overall, this study provides readers with a novel data-driven brain dynamics decomposition approach that enables better interpretation of injury metrics patterns and sensitivity across impact types while reducing DLHM dimensionality.

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AI-generated keywords: Brain Dynamics Decomposition

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This study focuses on developing a data-driven brain dynamics decomposition approach based on principal component analysis (PCA) to analyze the spatial distribution of brain deformation and extract representative patterns of injury metrics in different types of head impacts. The aim is to address the limitations of kinematics-based models that suffer from significant differences in both kinematics and injury metrics across head impact types. The study applies PCA to decompose the patterns of injury metrics, including maximum principal strain (MPS), MPS rate (MPSR), and MPSXMPSR, for all impacts in each impact type and investigates their distributions among brain regions using the first principal component (PC1). The study also develops a deep learning head model (DLHM) to predict PC1 and then inverse-transform to predict for all brain elements. The DLHM reached mean absolute errors of <0.018 for MPS, <3.7 (1/s) for MPSR, and <1.1 (1/s) for MPSXMPSR, which are much smaller than the injury thresholds. The brain injury metric in a dataset can be decomposed into mean components and PC1 with high explained variance, enabling better interpretation of the patterns in brain injury metrics and sensitivity across impact types while reducing the dimensionality of DLHM. However, there are several limitations worth mentioning. Firstly, although KTH FE model has been validated with experimental data on brain-skull relative motion, intracranial pressure, and brain strain, it is relatively limited when compared with more advanced FE models recently developed that consider gyri and sulci as well as cerebral vasculature modeling that significantly affects shear stress modeled by FE models. Therefore, future studies can adopt more advanced FE models to improve fidelity in brain dynamics modeling. Secondly, while this study focuses on modeling PC1 only, other components' influences should not be ignored as they may include more detailed information closely related to the injury outcome warranting further validation. Additionally, the mean components are extracted based on the mean over the training impacts which may lead to a significant decrease in prediction accuracy if test impacts are sampled from a significantly different data distribution. Therefore incorporating more higher-order principal components may enable more accurate DLHMs based on brain dynamics decomposition approach with loss function weighing PC1 more during DLHM training. Overall, this study provides readers with a novel data-driven brain dynamics decomposition approach that enables better interpretation of injury metrics patterns and sensitivity across impact types while reducing DLHM dimensionality. The limitations mentioned above can be addressed in future studies to improve fidelity in brain dynamics modeling and enable even more accurate DLHMs based on brain dynamics decomposition approach.

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